Genetic Information
Gene & Transcript Details
| ID | Status | Details |
|---|---|---|
| NM_006218.2 | Alternative | 3724 nt | 158–3364 |
| NM_006218.3 | Alternative | 9104 nt | 158–3364 |
| NM_006218.4 | MANE Select | 9259 nt | 324–3530 |
Variant Details
Clinical & Population Data
Population Frequency
gnomADClinVar
Open"This variant has been reported in ClinVar as Benign (7 clinical laboratories) and as Benign by ClinGen Brain Malformations Variant Curation Expert Panel expert panel."
COSMIC Somatic Evidence
Open
Functional Impact & Domains
Functional Domain
Error in OpenAI Consolidation. OncoKB: PIK3CAI391MPIK3CAI391MSomaticNCBI Gene:5290|Show additional gene information Variant OverviewPIK3CA, the catalytic subunit of PI3-kinase, is frequently mutated in a diverse range of cancers including breast, endometrial and cervical cancers.There is conflicting and/or weak data describing the biological significance of the PIK3CA I391M mutation.Hide mutation effect description The PIK3CA I391M mutation is located in the C2 domain in exon 7 of the protein. There is conflicting functional data for this mutation. In vitro kinase assays demonstrated that this mutation is likely neutral as measured by kinase activity comparable to wildtype PIK3CA (PMID: 20530683). However, expression of this mutation in MCF10A but not Ba/F3 cell lines led to proliferation in the absence of growth factors (PMID: 29533785). JAX-CKB: PIK3CA I391M lies within the C2 PI3K-type domain of the Pik3ca protein (UniProt.org). I391M demonstrates kinase activity similar to wild-type Pik3ca in one study (PMID: 20530683), but results in increased cell proliferation and cell viability as compared to wild-type Pik3ca in one of two different cell lines (PMID: 29533785), and therefore, its effect on Pik3ca protein function is unknown.
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Computational Analysis
Pathogenicity Predictions
SpliceAISpliceAI Scores
Window: ±500bp| Effect Type | Score | Position |
|---|---|---|
| Acceptor Loss (AL) | 0.0 | -31 bp |
| Donor Loss (DL) | 0.0 | 78 bp |
| Acceptor Gain (AG) | 0.0 | 59 bp |
| Donor Gain (DG) | 0.0 | -1 bp |
VCEP Guidelines
Applied ACMG/AMP Criteria (VCEP Specific)
BP4 (Unknown (Pre-LLM))
From pre-LLM assessment (LLM Failed)
BP6 (Unknown (Pre-LLM))
From pre-LLM assessment (LLM Failed)