Genetic Information
Gene & Transcript Details
| ID | Status | Details |
|---|---|---|
| NM_007294.4 | MANE Select | 7088 nt | 114–5705 |
| NM_007294.2 | Alternative | 7191 nt | 201–5792 |
| NM_007294.3 | RefSeq Select | 7224 nt | 233–5824 |
Variant Details
Clinical & Population Data
Population Frequency
gnomADClinVar
Open""
COSMIC Somatic Evidence
Open
Functional Impact & Domains
Functional Domain
Error in OpenAI Consolidation. OncoKB: BRCA1E23Vfs*17BRCA1E23Vfs*17SomaticNCBI Gene:672|Show additional gene information Variant OverviewBRCA1, a tumor suppressor involved in the DNA damage response, is mutated in various cancer types.The BRCA1 E23Vfs*17 mutation is known to be oncogenic.Hide mutation effect description The mutation effect description for E23fs in BRCA1 is: The BRCA1 E23fs mutation is located in the RING domain of the protein. It is a known deleterious mutation in BRCA1 that abolishes the RING-domain of the protein (PMID: 23867111, 15569676, 14729053). BRCA1 E23fs carries an associated risk of 56% for breast cancer, 16% for ovarian cancer and 16% for prostate cancer by age 70 (PMID: 9145676) and is one of the most common Ashkenazi Jewish BRCA1 founder mutations (PMID: 14576434). Modeling of this variant in mice via a BRCA1 185stop mutation demonstrated that this variant not only predisposed animals to mammary tumors but also compromised response to treatment with platinum drugs and PARP inhibitors (PMID: 27454287). In vitro studies with MCF-10A cells expressing this mutation have demonstrated that it is inactivating as measured by increased radiosensitivity, chromosomal instability, polyploid fractions and centrosome number compared to wildtype (PMID: 26246475). In vitro studies in cancer cells harboring RING-less BRCA1 also demonstrated that loss of the RING domain can confer resistance to PARP inhibitors and platinum agents (PMID: 27454289). JAX-CKB: No results found
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Computational Analysis
Pathogenicity Predictions
SpliceAISpliceAI Scores
Window: ±500bp| Effect Type | Score | Position |
|---|---|---|
| Acceptor Loss (AL) | 0.05 | 88 bp |
| Donor Loss (DL) | 0.0 | 488 bp |
| Acceptor Gain (AG) | 0.01 | 75 bp |
| Donor Gain (DG) | 0.03 | -10 bp |
VCEP Guidelines
Applied ACMG/AMP Criteria (VCEP Specific)
PVS1 (Unknown (Pre-LLM))
From pre-LLM assessment (LLM Failed)
PM2 (Unknown (Pre-LLM))
From pre-LLM assessment (LLM Failed)