Analysis in progress
Initialising…
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This report is still being assembled — sections appear as each stage finishes. It isn't final yet.
RAD51C
Final classification
VUS
RAD51C c.848C>T · p.Thr283Ile
RAD51C

The variant NM_058216.3:c.848C>T (p.Thr283Ile) in RAD51C is absent from all population databases (gnomAD v2.1, v4.1, and gnomAD-Canada), meeting PM2 at supporting strength.

Gene
RAD51C
Transcript
NM_058216.3
HGVS · transcript:coding
NM_058216.3:c.848C>T
Consequence
N/A
GRCh38
chr17:58720756 C>T
GRCh37
chr17:56798117 C>T
Basis ClinGen Hereditary Breast, Ovarian and Pancreatic Cancer Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for RAD51C Version 1.0.0 v1.0.0 lacked a usable explicit final combination framework, so generic ACMG/AMP 2015 final-combination rules were applied as fallback; applied criteria: PM2 supporting; combination = 1 supporting, which maps to VUS.
ClinGen Hereditary Breast, Ovarian and Pancreatic Cancer Expert Panel Specifications to the ACMG/AMP Variant Interpretation Guidelines for RAD51C Version 1.0.0 v1.0.0 lacked a usable explicit final combination framework, so generic ACMG/AMP 2015 final-combination rules were applied as fallback; applied criteria: PM2 supporting; combination = 1 supporting, which maps to VUS.
Classification rationale
PM2 VUS
RAD51C c.848C>T

The variant NM_058216.3:c.848C>T (p.Thr283Ile) in RAD51C is absent from all population databases (gnomAD v2.1, v4.1, and gnomAD-Canada), meeting PM2 at supporting strength.1 The variant is a missense change not triggering PVS1. No alternative pathogenic missense at the same residue (PM5), no de novo observations (PS2/PM6), no functional studies (PS3/BS3), no case-control or prevalence data (PS4), no segregation data (PP1/BS4), and no patient phenotype data (PP4) are available.2 In silico predictors are mixed: REVEL (0.308) is indeterminate, BayesDel (0.074) is in the benign range, and SpliceAI predicts no splice impact (0.00). Neither PP3 nor BP4 is met.3 The RAD51C Hereditary Breast, Ovarian and Pancreatic Cancer VCEP specification (v1.0.0, doc_id 1535377178) is in preparation and does not provide finalized criterion-specific rules. Assessment defaults to generic ACMG/AMP 2015 guidelines (PMID:25741868).4 Under generic ACMG/AMP 2015 combination rules, a single supporting pathogenic criterion (PM2) is insufficient to reach Likely Pathogenic. No benign criteria are met. The variant is classified as a Variant of Uncertain Significance (VUS).5

PM2 VUS
2 pvs1_variant_assessmentclinvar ↗oncokb ↗
3 revelbayesdelspliceai ↗
4 cspec ↗generic_acmg_combination_rules
5 generic_acmg_combination_rules
Gene diagram · NM_058216.3 · variants mapped to exon structure
RAD51C NM_058216.3
Fetching transcript structure from UCSC…
Applied criteria · 1 met · select any tile
Met
Not met
Not assessed
N/A
Strength very strong supporting
Pathogenic evidence
PVS
PS
PM
PP
Benign evidence
BA
BS
BP
Rationale
Select a criterion.
Sources
Evidence used
    Gaps remaining
      Rule
      Research & evidence
      Population frequency
      gnomAD v4.1 screenshot
      gnomAD v4.1
      gnomAD v2.1 screenshot
      gnomAD v2.1
      v4.1
      Absent from gnomAD v4.1.
      v2.1
      Absent from gnomAD v2.1.
      🇨🇦 CA
      Absent from gnomAD-Canada v1.0.
      Allele frequency by ancestry
      three datasets · side by side
      gnomAD v4.1
      Absent · 0 / ?
      0 hom
      Not observed in any ancestry group.
      gnomAD v2.1
      Absent · 0 / ?
      0 hom
      Not observed in any ancestry group.
      gnomAD Canada 🇨🇦
      Absent · 0 / ?
      0 hom
      Not observed in any ancestry group.
      ClinVar screenshot
      ClinVar
      This variant is absent from ClinVar.
      SpliceAI screenshot
      In silico
      SpliceAI predicts no significant splice impact for this variant (max delta score = 0.00). REVEL score = 0.308. BayesDel score = 0.0741864.
      Functional / OncoKB screenshot
      Functional Unknown Oncogenic Effect
      OncoKB did not identify variant-specific reviewed functional evidence for this variant; gene-level curated context is available for reviewer follow-up. RAD51C, a DNA repair protein, is altered by mutation or deletion in certain breast cancers.
      OncoKB ↗
      COSMIC screenshot
      COSMIC
      Cancer hotspots screenshot
      Cancer hotspots
      Somatic evidence Not in COSMIC / hotspots
      COSMIC
      This variant does not lie in a statistically significant hotspot. This variant has not previously been reported in somatic cancers (COSMIC).
      Hotspots
      This variant does not lie in a statistically significant hotspot.
      Sources & reference links
      9Sources
      CSpec VCEP
      ClinVar
      gnomAD v2.1
      gnomAD v4.1
      gnomAD-Canada
      SpliceAI
      OncoKB
      COSMIC
      Cancer hotspots