PM2 supporting: the gnomAD v4.1 grpmax FAF is 0.000739%, below the ATM VCEP 0.001% threshold. BP4 supporting: SpliceAI maximum delta score is 0.00, meeting the ATM VCEP no-splice-impact threshold.
ATM encodes a kinase that acts as a master controller of the cellular DNA damage response: it detects double-strand breaks and coordinates DNA repair, cell cycle arrest, or apoptosis through downstream targets including p53, BRCA1, and CHK2. Loss-of-function mutations in both copies of ATM cause ataxia telangiectasia, an autosomal recessive disorder characterized by neurological problems, immune deficiency, and cancer predisposition. ATM functions as a tumor suppressor: individuals with ataxia telangiectasia are prone to childhood lymphomas, leukemias, and breast cancer, while carriers of a single altered copy have increased risk of breast, pancreatic, prostate, and other cancers. Somatic ATM mutations also occur in lymphoid malignancies and solid tumors, and ATM-deficient cancers are often especially sensitive to DNA-damaging treatments.
This ATM variant is assessed in the context of ATM's role as a tumor suppressor and master regulator of DNA-damage repair, with biallelic loss of function causing ataxia-telangiectasia and heterozygous alterations contributing to cancer predisposition.
PM2 supporting: the gnomAD v4.1 grpmax FAF is 0.000739%, below the ATM VCEP 0.001% threshold. BP4 supporting: SpliceAI maximum delta score is 0.00, meeting the ATM VCEP no-splice-impact threshold.
East Asian 2 / 44,846 |
0.0045% |
Remaining individuals 1 / 62,466 |
0.0016% |
European (non-Finnish) 4 / 1,178,994 |
0.00034% |
East Asian 1 / 18,382 |
0.0054% |