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LYFE SCIENCES
Project: HERA
NM_001202543.1:c.*25175G>A
ACMG/AMP
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Classification rationale
1

The NM_001202543.1:c.*25175G>A variant could not be assigned to a validated gene, genomic coordinate, or protein consequence, so somatic cancer and germline disease database observations were not established.

2

Population frequency could not be evaluated because a validated genomic representation was not available for gnomAD-based review.

3

No published functional evidence establishing either a damaging or benign effect was identified, and gene-level loss-of-function context remained unresolved for PVS1 consideration.

4

SpliceAI, REVEL, and BayesDel results were not available for this variant representation, so computational evidence could not support either PP3 or BP4.

Applied criteria
Met
Not met
Not assessed
N/A
Very strong
Strong
Moderate
Supporting
Pathogenic evidence
PVS
PVS1
PS
PS1
PS2
PS3
PS4
PM
PM1
PM2
PM3
PM4
PM5
PM6
PP
PP1
PP2
PP3
PP4
PP5
Benign evidence
BA
BA1
BS
BS1
BS2
BS3
BS4
BP
BP1
BP2
BP3
BP4
BP5
BP6
BP7
PVS1
Rationale
Select a criterion to inspect its explanation.
Evidence used
Gaps remaining
Rule
Publications
Research and evidence
01
Population
gnomAD v2.1Available
gnomAD v4.1Available
gnomAD CanadaAvailable
02
ClinVar
No ClinVar summary recorded.
03
Functional
No functional summary recorded.
04
In silico
No in silico summary recorded.
05
COSMIC
No COSMIC summary recorded.
06
Cancer hotspots
No cancer hotspot summary recorded.