PM2 (supporting): the variant is absent from gnomAD v2.1 and v4.1 at an allele frequency of 0, supporting rarity only at supporting strength.
POLE encodes the catalytic subunit of DNA polymerase epsilon, the enzyme that replicates the leading strand of DNA during cell division and participates in DNA repair. It contains a proofreading domain that corrects replication errors, keeping the accumulation of mutations in check. Germline mutations in POLE cause polyposis and predispose to colorectal cancer, and are also linked to a rare syndrome of facial dysmorphism, immunodeficiency, livedo, and short stature. Somatic mutations, particularly in the proofreading domain, occur in colorectal and endometrial cancers, where they drive an ultra-mutated tumor phenotype and are associated with better responses to immune checkpoint inhibitors.
POLE germline pathogenic variants act mainly through exonuclease/proofreading-domain missense hotspots that cause polymerase proofreading-associated polyposis, whereas this change is deep-intronic, leaves the protein product unchanged (NP_006222.2:p.?), and has no supporting functional or segregation data, so its contribution to POLE-associated colorectal cancer predisposition remains unestablished.
PM2 (supporting): the variant is absent from gnomAD v2.1 and v4.1 at an allele frequency of 0, supporting rarity only at supporting strength.