PM2 (Supporting): absent from gnomAD v4.1, satisfying the <=0.001% rarity threshold. Overall classification: VUS, as the sole PM2 (Supporting) criterion satisfies no pathogenic or benign combination rule.
ATM encodes a kinase that acts as a master controller of the cellular DNA damage response: it detects double-strand breaks and coordinates DNA repair, cell cycle arrest, or apoptosis through downstream targets including p53, BRCA1, and CHK2. Loss-of-function mutations in both copies of ATM cause ataxia telangiectasia, an autosomal recessive disorder characterized by neurological problems, immune deficiency, and cancer predisposition. ATM functions as a tumor suppressor: individuals with ataxia telangiectasia are prone to childhood lymphomas, leukemias, and breast cancer, while carriers of a single altered copy have increased risk of breast, pancreatic, prostate, and other cancers. Somatic ATM mutations also occur in lymphoid malignancies and solid tumors, and ATM-deficient cancers are often especially sensitive to DNA-damaging treatments.
This missense change is classified as a VUS, meaning it neither establishes nor excludes ATM-related disease. Because loss of ATM function causes ataxia telangiectasia and raises cancer risk in carriers, this variant's extreme rarity alone cannot establish pathogenicity, and functional or segregation evidence is still needed.
PM2 (Supporting): absent from gnomAD v4.1, satisfying the <=0.001% rarity threshold. Overall classification: VUS, as the sole PM2 (Supporting) criterion satisfies no pathogenic or benign combination rule.