PIK3CA encodes the p110α catalytic subunit of phosphoinositide 3-kinase (PI3K), an enzyme that converts the membrane lipid PIP2 into PIP3, thereby activating signaling cascades such as the AKT-mTOR pathway that promote cell survival, proliferation, growth, and motility. It is among the most commonly mutated genes in cancer, and aberrant activation of PI3K signaling is a driving event in tumor development, with the gene implicated in cancers including cervical cancer. Because this pathway is central to tumor growth, it is a major target of cancer therapies, although drug-induced pathway activation can also contribute to treatment resistance.
This variant
PIK3CA is a well-established cancer driver whose activating mutations promote tumor growth and are central to cancer therapy decisions. Although p.Pro449Leu falls within the gene's kinase domain, it remains a VUS because no variant-specific functional, segregation, or recurrence evidence confirms an effect - the only functional data concern a different substitution at the same residue.
Transcript
NM_006218.4
HGVS · transcript:coding
NM_006218.4:c.1346C>T
GRCh38
chr3:179210280 C>T
GRCh37
chr3:178928068 C>T
BasisVUS: under generic ACMG/AMP 2015 rules (the gene-specific ruleset was incomplete), only PM1 and PM2 at Supporting strength were met, and two supporting criteria do not combine to Likely Pathogenic or Pathogenic.▾
VUS: under generic ACMG/AMP 2015 rules (the gene-specific ruleset was incomplete), only PM1 and PM2 at Supporting strength were met, and two supporting criteria do not combine to Likely Pathogenic or Pathogenic.
Classification rationale
PM1PM2VUS
PIK3CA c.1346C>Tmissense · exon 8
PM1 (Supporting): residue 449 lies in the VCEP-approved PIK3CA kinase-domain interval (AA 322-483). PM2 (Supporting): the variant is absent from gnomAD v2.1, v4.1, and gnomAD-Canada v1.0. Overall: VUS - PM1 and PM2 at Supporting strength are the only met criteria, and two supporting pathogenic criteria do not satisfy the ACMG/AMP 2015 Likely Pathogenic combination.
PM1 + PM2→VUS
Gene diagram
· NM_006218.4 · variants mapped to exon structure
PIK3CANM_006218.4
Fetching transcript structure from UCSC…
Exons
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Transcript span
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Strand
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Variants mapped
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Source
UCSC ncbiRefSeqCurated
All variants in PIK3CA—click a row to locate it on the plot · use the link column to open its page
Variant ↕
Protein
Location
Classification
Link
Applied criteria · 2 applied · 12 assessed
MetEvidence satisfies this criterion.
Not metEvaluated against available evidence; threshold not reached.
Not assessedApplies in principle, but no evidence was found to evaluate it.
N/ADoesn't apply to this variant type.
Applied · 2
Strength Supporting Moderate Strong Very strong
✓
PM1supportingPathogenic
Met (Supporting): residue 449 lies in the PIK3CA kinase-domain interval AA 322-483 approved in the VCEP specification.
The governing ClinGen Brain Malformations VCEP specification lists PIK3CA kinase-domain AA 322-483 as an approved critical functional domain for PM1_Supporting; residue 449 is within this interval.
Met (Supporting): the variant is absent from gnomAD v2.1, v4.1, and gnomAD-Canada v1.0, meeting the VCEP rarity threshold.
The governing Brain Malformations VCEP specifies PM2 at Supporting strength for a variant absent/rare from controls in an ethnically matched cohort population sample, with a maximum of one person.The exact variant NM_006218.4:c.1346C>T (p.Pro449Leu) is reported absent from gnomAD v2.1.The exact variant is reported absent from gnomAD v4.1.
This variant has been reported in ClinVar as Pathogenic (1 clinical laboratory) and as Likely pathogenic (1 clinical laboratory). (ClinVarID = 1804026)
OncoKB did not identify variant-specific reviewed functional evidence for this variant; gene-level curated context is available for reviewer follow-up. PIK3CA, the catalytic subunit of PI3-kinase, is frequently mutated in a diverse range of cancers including breast, endometrial and cervical cancers.
This variant lies in a statistically significant hotspot. This variant has previously been reported in somatic cancers (COSMIC; COSV55899150, n = 2 times).
Hotspots
This variant lies in a statistically significant hotspot.